QM/MM modeling of the hydroxylation of the androstenedione substrate catalyzed by cytochrome P450 aromatase (CYP19A1)

CYP19A1 aromatase is a member of the Cytochrome P450 family of hemeproteins, and is the enzyme responsible for the final step of the androgens conversion into the corresponding estrogens, via a three‐step oxidative process. For this reason, the inhibition of this enzyme plays an important role in the treatment of hormone‐dependent breast cancer. The first catalytic subcycle, corresponding to the hydroxilation of androstenedione, has been proposed to occur through a first hydrogen abstraction and a subsequent oxygen rebound step. In present work, we have studied the mechanism of the first catalytic subcycle by means of hybrid quantum mechanics/molecular mechanics methods. The inclusion of the protein flexibility has been achieved by means of Free Energy Perturbation techniques, giving rise to a free energy of activation for the hydrogen abstraction step of 13.5 kcal/mol. The subsequent oxygen rebound step, characterized by a small free energy barrier (1.5 kcal/mol), leads to the hydroxylated products through a highly exergonic reaction. In addition, an analysis of the primary deuterium kinetic isotopic effects, calculated for the hydrogen abstraction step, reveals values (～10) overpassing the semiclassical limit for the C? H, indicating the presence of a substantial tunnel effect. Finally, a decomposition analysis of the interaction energy for the substrate and cofactor in the active site is also discussed. According to our results, the role of the enzymatic environment consists of a transition state stabilization by means of dispersive and polarization effects. © 2015 Wiley Periodicals, Inc.     

Inversion twinning in a second polymorph of the hydrochloride salt of the recreational drug ethylone

A second polymorph of the hydrochloride salt of the recreational drug ethylone, C₁₂H₁₆NO₃⁺·Cl⁻, is reported [systematic name: (±)‐2‐ethylammonio‐1‐(3,4‐methylenedioxyphenyl)propane‐1‐one chloride]. This polymorph, denoted form (A), appears in crystallizations performed above 308 K. The originally reported form (B) [Wood et al. (2015). Acta Cryst. C 71 , 32–38] crystallizes preferentially at room temperature. The conformations of the cations in the two forms differ by a 180° rotation about the C—C bond linking the side chain to the aromatic ring. Hydrogen bonding links the cations and anions in both forms into similar extended chains in which any one chain contains only a single enantiomer of the chiral cation, but the packing of the ions is different. In form (A), the aromatic rings of adjacent chains interleave, but pack equally well if neighbouring chains contain the same or opposite enantiomorph of the cation. The consequence of this is then near perfect inversion twinning in the structure. In form (B), neighbouring chains are always inverted, leading to a centrosymmetric space group. The question as to why the polymorphs crystallize at slightly different temperatures has been examined by density functional theory (DFT) and lattice energy calculations and a consideration of packing compactness. The free energy (ΔG) of the crystal lattice for polymorph (A) lies some 52 kJ mol⁻¹ above that of polymorph (B).     

基于化学学科核心素养发展的元素化合物教学案例研究*

通过“燃煤污染与防治”“金属矿物的开发利用”等2个典型的元素化合物教学案例,探讨如何将元素化合物的学习置于一定挑战性的问题情境中,形成问题解决基本思路,从化学视角分析解决实际问题,促进学生化学学科核心素养的发展。     

数字比色分析法在大学本科化学实验中的应用*——铁-磺基水杨酸配合物稳定常数的测定

数字比色法是近年来发展起来的一种检测方法。“铁-磺基水杨酸配合物稳定常数的测定”是大学无机化学中的经典本科学生实验。将数字比色法应用于该学生实验并与常规的分光光度法分析结果进行了对比。首先,探究了数字比色法的数据采集,即照片拍摄条件的因素控制。其次,通过数据比较分析了数字比色法的应用特点。结果显示,数字比色法的灵敏度介于目视比色法与分光光度法之间。该方法对较小的颜色差异分辨能力不足而对比较明显的颜色变化区分能力较好。在本科实验教学中,将该方法应用于颜色变化梯度明显的化学反应体系可获得较好的分析结果。     

顺式六氢-1H-呋喃并[3,4-C]吡咯的合成

以N-（甲氧甲基）-N-（三甲基硅甲基）苄胺和马来酸二甲酯为原料通过环加成、氢化铝锂还原、T_SOH催化脱水、氢氧化钯/碳催化氢化脱苄基四步反应,设计并合成了一种含氮、氧的杂环化合物--顺式六氢-1H-呋喃并[3,4-C]吡咯,其结构经¹H NMR, ¹³ C NMR和MS（ESI）表征。      

Recent Advances of Beta Zeolite in the Volatile Organic Compounds(VOCs) Elimination by the Catalytic Oxidations

Volatile organic compounds(VOCs) have become one of the most serious threats to human health and eco-environment due to their volatility, toxicity and diffusivity, etc. Catalytic completely oxidation had been regarded as a highly efficient strategy for the VOCs abatement. Metal or metal oxides supported on zeolite have been considered as superior catalysts for the treatment of VOCs. Among them, Beta zeolites have attracted many attentions due to their unique structure and consequently catalytic properties in the oxidation of VOCs. The progresses and developments made in the understanding and design of Beta zeolites-based catalysts in the completely oxidation of VOCs in the past two decades have been systematically summarized in this review.     

Vacuum Ultraviolet Free-Electron Laser Photoionization Mass Spectrometry of Alpha-pinene Ozonolysis

\begin{document}$\alpha$\end{document}-pinene is the most abundant monoterpene that represents an important family of volatile organic compounds. Molecular identification of key transient compounds during the \begin{document}$\alpha$\end{document}-pinene ozonolysis has been proven to be a challenging experimental target because of a large number of intermediates and products involved. Here we exploit the recently developed hybrid instruments that integrate aerosol mass spectrometry with a vacuum ultraviolet free-electron laser to study the \begin{document}$\alpha$\end{document}-pinene ozonolysis. The experiments of \begin{document}$\alpha$\end{document}-pinene ozonolysis are performed in an indoor smog chamber, with reactor having a volume of 2 m\begin{document}$^3$\end{document} which is made of fluorinated ethylene propylene film. Distinct mass spectral peaks provide direct experimental signatures of previously unseen compounds produced from the reaction of \begin{document}$\alpha$\end{document}-pinene with O\begin{document}$_3$\end{document}. With the aid of quantum chemical calculations, plausible mechanisms for the formation of these new compounds are proposed. These findings provide crucial information on fundamental understanding of the initial steps of \begin{document}$\alpha$\end{document}-pinene oxidation and the subsequent processes of new particle formation.     

Enhanced photoactivity of CdS nanorods by MXene and ZnSnO3: Application in photoelectrochemical biosensor for the effect of environmental pollutants on DNA hydroxymethylation in wheat tissues

The photoactivity of CdS nanorods was greatly improved by amino functionalized accordion-like MXene and spherical ZnSnO₃. MXene possesses good electron transfer capability and ZnSnO₃ presents matched energy band with CdS, which deeply accelerate the electron transfer and prevent the recombination of photogenerated electron-hole pair, leading to a strong photoelectrochemical (PEC) response. Taking the merit of the improved photoactivity of CdS nanorods, a novel PEC biosensor was constructed for DNA hydromethylation detection based on immune recognition of target molecule, where 5-hydroxymethyl-2′-deoxycytidine triphosphate (5hmdCTP) was employed as detect target, CdS/MXene was used as photoactive material, and ZnSnO₃ was adopted as signal amplification unit. Under enzymatic covalent reaction of –CH₂OH of 5hmdCTP with –NH₂ of MXene, 5hmdCTP was specifically recognized and captured. Then, taking advantages of the covalent reaction between phosphate group of 5hmdCTP and ZnSnO₃, the signal amplification unit was captured. Under the optimum conditions, this PEC biosensor presents wide linear range of 0.008–100 nM and low detection limit of 4.21 pM (3σ). The applicability of the developed method was evaluated by investigating the effect of Cd²⁺ and perfluorohexane compound pollutant on 5-hydroxymethylcytosine content in the genomic DNA of the roots and leaves of wheat seedlings.     

脱水Ni-Fe类水滑石的制备及其作为环保型催化剂用于生物质糠醛的高选择性缩醛化反应

合成了含硝酸根离子的脱水Ni-Fe类水滑石（Ni-Fe HTLCs）并将其应用于室温下的糠醛缩醛化反应。脱水Ni-Fe HTLCs对糠醛缩醛化反应显示出高选择性并基本实现糠醛的完全转化。作为耐水的路易斯酸和脱水剂,脱水Ni-Fe HTLCs被证明是适用于糠醛缩醛化反应的高效双功能催化剂。通过研究发现,脱除Ni-Fe HTLCs中水分导致颗粒收缩并增强层板间硝酸根离子间的电荷互斥,Ni-Fe HTLCs中弱酸性位点在糠醛缩醛化中发挥重要作用,脱水可改变酸性位点结构并增强其活性。脱水Ni-Fe HTLCs可吸收缩醛化反应中产生的大部分水分,但吸水后Ni-Fe HTLCs的结构并不能完全恢复,这可能是由扩散进入HTLCs层板间的有机分子导致。     

β-二亚胺配体支持的铝胺化合物的制备及其催化ε-己内酯开环聚合的高效性能

成功合成了由β-二亚胺配体(L)支持的铝胺化合物(L)AlH(NMe2)2(L=HC(C(Me)NAr)2,Ar=2,6-iPr2C6H3)(1)。该化合物采用分步合成法进行制备,以n-BuLi与HNMe2反应生成的锂盐LiNMe2作为前驱体,进一步与(L)AlH2溶液共混通过消除LiH得到目标产物。通过核磁共振谱、元素分析、红外漫反射光谱和X射线单晶衍射确定了铝胺化合物(L)AlH(NMe2)2的组成与结构。该铝胺化合物中,金属Al中心同时形成Al-H和Al-NMe2基团,在催化ε-己内酯的开环聚合的反应中展现出了优异的催化活性。通过高效凝胶渗透色谱测定了所得聚合物的分子量和分子量分布。